Methods for working with matrices in com(p)adre

This page describes methods for accessing any matrix information from CompadreMat and CompadreDB objects.

Most methods for working with matrices are applicable to both CompadreMat and CompadreDB objects. These are described on this page (along with a couple) of methods applicable to only CompadreMat or CompadreDB objects).

matA(object)

# S4 method for CompadreMat
matA(object)

# S4 method for CompadreDB
matA(object)

# S4 method for list
matA(object)

matU(object)

# S4 method for CompadreMat
matU(object)

# S4 method for CompadreDB
matU(object)

# S4 method for list
matU(object)

matF(object)

# S4 method for CompadreMat
matF(object)

# S4 method for CompadreDB
matF(object)

# S4 method for list
matF(object)

matC(object)

# S4 method for CompadreMat
matC(object)

# S4 method for CompadreDB
matC(object)

# S4 method for list
matC(object)

matrixClass(object)

# S4 method for CompadreMat
matrixClass(object)

# S4 method for CompadreDB
matrixClass(object)

# S4 method for list
matrixClass(object)

MatrixClassAuthor(object)

# S4 method for CompadreMat
MatrixClassAuthor(object)

# S4 method for CompadreDB
MatrixClassAuthor(object)

# S4 method for list
MatrixClassAuthor(object)

MatrixClassOrganized(object)

# S4 method for CompadreMat
MatrixClassOrganized(object)

# S4 method for CompadreDB
MatrixClassOrganized(object)

# S4 method for list
MatrixClassOrganized(object)

MatrixClassNumber(object)

# S4 method for CompadreMat
MatrixClassNumber(object)

# S4 method for CompadreDB
MatrixClassNumber(object)

# S4 method for list
MatrixClassNumber(object)

Arguments

object

A CompadreDB object

Slots

matA

A matrix population model (i.e. a square projection matrix)

matU

The survival component of a matrix population model (i.e. a square projection matrix reflecting survival-related transitions; e.g. progression, stasis, and retrogression)

matF

The sexual component of a matrix population model (i.e. a square projection matrix reflecting transitions due to sexual reproduction)

matC

The clonal component of a matrix population model (i.e. a square projection matrix reflecting transitions due to clonal reproduction)

matrixClass

A data frame with columns MatrixClassOrganized (elements are "active", "prop", or "dorm") MatrixClassAuthor (the matrix author's stage description), and MatrixClassNumber (integer stage number)