CompadreMatrixMethods.RdThis page describes methods for accessing any matrix information from CompadreMat and CompadreDB objects.
Most methods for working with matrices are applicable to both CompadreMat and CompadreDB objects. These are described on this page (along with a couple) of methods applicable to only CompadreMat or CompadreDB objects).
matA(object) # S4 method for CompadreMat matA(object) # S4 method for CompadreDB matA(object) # S4 method for list matA(object) matU(object) # S4 method for CompadreMat matU(object) # S4 method for CompadreDB matU(object) # S4 method for list matU(object) matF(object) # S4 method for CompadreMat matF(object) # S4 method for CompadreDB matF(object) # S4 method for list matF(object) matC(object) # S4 method for CompadreMat matC(object) # S4 method for CompadreDB matC(object) # S4 method for list matC(object) matrixClass(object) # S4 method for CompadreMat matrixClass(object) # S4 method for CompadreDB matrixClass(object) # S4 method for list matrixClass(object) MatrixClassAuthor(object) # S4 method for CompadreMat MatrixClassAuthor(object) # S4 method for CompadreDB MatrixClassAuthor(object) # S4 method for list MatrixClassAuthor(object) MatrixClassOrganized(object) # S4 method for CompadreMat MatrixClassOrganized(object) # S4 method for CompadreDB MatrixClassOrganized(object) # S4 method for list MatrixClassOrganized(object) MatrixClassNumber(object) # S4 method for CompadreMat MatrixClassNumber(object) # S4 method for CompadreDB MatrixClassNumber(object) # S4 method for list MatrixClassNumber(object)
| object | A CompadreDB object |
|---|
matAA matrix population model (i.e. a square projection matrix)
matUThe survival component of a matrix population model (i.e. a square projection matrix reflecting survival-related transitions; e.g. progression, stasis, and retrogression)
matFThe sexual component of a matrix population model (i.e. a square projection matrix reflecting transitions due to sexual reproduction)
matCThe clonal component of a matrix population model (i.e. a square projection matrix reflecting transitions due to clonal reproduction)
matrixClassA data frame with columns MatrixClassOrganized
(elements are "active", "prop", or "dorm") MatrixClassAuthor (the
matrix author's stage description), and MatrixClassNumber (integer
stage number)