Learn BaSTA in R by Owen Jones, Maren Rebke and Fernando Colchero


Introduction

Since the BaSTA package was published in 2012 it has been cited a few times. Initially these citations were simply highlighting the availability of BaSTA and the utility of its novel approach. More recently researchers have been using (and citing!) BaSTA for their own data analysis. The following bibliography includes all of the papers we know of.

BaSTA citations

2015

Boonekamp, J.J., Salomons, M., Bouwhuis, S., Dijkstra, C. & Verhulst, S. (2015). Addendum to: Reproductive effort accelerates actuarial senescence in wild birds: an experimental study. Ecology Letters (2015) 18: 315–315. doi: 10.1111/ele.12404

Moustakas, A. and Evans, M. (2015) Effects of growth rate, size, and light availability on tree survival across life stages: a demographic analysis accounting for missing values and small sample sizes. BMC Ecology 2015, 15:6 doi: 10.1186/s12898-015-0038-8

2014

Boonekamp, J.J., Salomons, M., Bouwhuis, S., Dijkstra, C. & Verhulst, S. (2014). Reproductive effort accelerates actuarial senescence in wild birds: an experimental study. Ecol. Lett., 17, 599–605.

Koons, D. N., Gamelon, M., Gaillard, J.-M., Aubry, L. M., Rockwell, R. F., Klein, F., Choquet, R., Gimenez, O. (2014), Methods for studying cause-specific senescence in the wild. Methods in Ecology and Evolution, 5: 924–933. doi: 10.1111/2041-210X.12239

Korner-Nievergelta, K & Robinson, R.A. (2014) Introducing the R-package birdring. Ringing & Migration. 29(1): 51-61. doi: 10.1080/03078698.2014.933053

McDonald, J.L., Graham C. Smith , Robbie A. McDonald , Richard J. Delahay , Dave Hodgson (2014) Mortality trajectory analysis reveals the drivers of sex-specific epidemiology in natural wildlife–disease interactions. Proc. R. Soc. B: 2014 281 20140526; doi: 10.1098/rspb.2014.0526.

Merow, C., Dahlgren, J. P., Metcalf, C. J. E., Childs, D. Z., Evans, M. E.K., Jongejans, E. , Record, S., Rees, M., Salguero-Gómez, R., McMahon, S. M. (2014), Advancing population ecology with integral projection models: a practical guide. Methods in Ecology and Evolution, 5: 99–110. doi: 10.1111/2041-210X.12146

Miller, D.A., Janzen, F.J., Fellers, G.M., Kleeman, P.M., Bronikowski, A.M. (2014) Biodemography of Ectothermic Tetrapods Provides Insights into the Evolution and Plasticity of Mortality Patterns. In: Sociality, Hierarchy, Health:: Comparative Biodemography: Papers from a Workshop. Committee on Population, Division of Behavioral and Social Sciences and Education, National Research Council. National Academies Press, 400pp.

Moni, M.A. and Liò, P. (2014) comoR: a software for disease comorbidity risk assessment. Journal of Clinical Bioinformatics. 4:8. DOI: 10.1186/2043-9113-4-8.

Vinicius L, Mace R, Migliano A (2014) Variation in Male Reproductive Longevity across Traditional Societies. PLoS ONE 9(11): e112236. doi: 10.1371/journal.pone.0112236

2013

Hanson N, Thompson D, Duck C, Moss S, Lonergan M (2013) Pup Mortality in a Rapidly Declining Harbour Seal (Phoca vitulina) Population. PLoS ONE 8(11): e80727. doi: 10.1371/journal.pone.0080727

Laake, J. L., Johnson, D. S., Conn, P. B. (2013), marked: an R package for maximum likelihood and Markov Chain Monte Carlo analysis of capture–recapture data. Methods in Ecology and Evolution, 4: 885–890. doi: 10.1111/2041-210X.12065

Matechou, E., Pledger, S., Efford, M., Morgan, B. J.T., Thomson, D. L. (2013), Estimating age-specific survival when age is unknown: open population capture–recapture models with age structure and heterogeneity. Methods in Ecology and Evolution, 4: 654–664. doi: 10.1111/2041-210X.12061

Salguero-Gómez, R., Shefferson, R. P., Hutchings, M. J. (2013), Plants do not count… or do they? New perspectives on the universality of senescence. Journal of Ecology, 101: 545–554. doi: 10.1111/1365-2745.12089

Zajitschek, F., Jin, T., Colchero, F., and Maklakov, A.A. (2013) Aging Differently: Diet- and Sex-Dependent Late-Life Mortality Patterns in Drosophila melanogaster. J Gerontol A Biol Sci Med Sci. doi: 10.1093/gerona/glt158

2012

Baudisch, A. and Vaupel, J.W. Getting to the root of aging. Science. 2012 Nov 2; 338(6107): 618–619. doi: 10.1126/science.1226467